As stated in this: [DONE] Ability to reorder app list in Automations window - #3 by Leo the app list in the Automations Window matches the order of Apps in the main window, however, it seems that when you archive a Workspace this remains in the same location in the workflow list:
I would like ‘archived’ Workspaces to be removed from the main list in the automations window they could go in an ‘Archive’ section at the bottom if they need to stay listed.